PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G086100.1
Common NameB456_007G086100, LOC105802541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 25794.1 Da    PI: 5.4558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G086100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18109159356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +kGVr+++ +g ++AeIrdp+   k  r++lg++ t+e+Aa a+++a+ +++g+
  Gorai.007G086100.1 109 FKGVRRRP-WGTYAAEIRDPKR--KGGRIWLGTYETPEDAALAYDKAAFEMHGA 159
                         8*******.**********843..349*************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.08E-27108168No hitNo description
PfamPF008479.3E-12108158IPR001471AP2/ERF domain
PROSITE profilePS5103222.748108166IPR001471AP2/ERF domain
SMARTSM003802.1E-32108172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30108167IPR001471AP2/ERF domain
PRINTSPR003674.5E-8109120IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21109167IPR016177DNA-binding domain
PRINTSPR003674.5E-8132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKRFVENNIS DSELNMYLVD GFDECPATTA FTGVVPEPFY NRSSSFSGVF LNESRGDLPL  60
KIDDSEDMLV YGALRDAANP GWSGPSEVDL KTVAEAEVEV AVPQQEMRFK GVRRRPWGTY  120
AAEIRDPKRK GGRIWLGTYE TPEDAALAYD KAAFEMHGAK AKLNFPHLIG TDCSWEPIRV  180
GSRRRSPEHS AWTALSGSTN CPAKPKKKKN REISIQAEAS LAAEMIEMSP FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24109166360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A2e-24109166663ATERF1
2gcc_A2e-24109166663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489696.11e-174PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K17e-60ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2P5I01e-174A0A0D2P5I0_G
STRINGPOPTR_0014s04600.11e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-59ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]