PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G086100.1

Common Name

B456_007G086100, LOC105802541

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 233aa MW: 25794.1 Da PI: 5.4558

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G086100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.3e-18	109	159	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g ++AeIrdp+ k r++lg++ t+e+Aa a+++a+ +++g+ Gorai.007G086100.1 109 FKGVRRRP-WGTYAAEIRDPKR--KGGRIWLGTYETPEDAALAYDKAAFEMHGA 159 8*****.******843..349***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.08E-27	108	168	No hit	No description
Pfam	PF00847	9.3E-12	108	158	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.748	108	166	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-32	108	172	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-30	108	167	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-8	109	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-21	109	167	IPR016177	DNA-binding domain
PRINTS	PR00367	4.5E-8	132	148	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MKRFVENNIS DSELNMYLVD GFDECPATTA FTGVVPEPFY NRSSSFSGVF LNESRGDLPL 60 KIDDSEDMLV YGALRDAANP GWSGPSEVDL KTVAEAEVEV AVPQQEMRFK GVRRRPWGTY 120 AAEIRDPKRK GGRIWLGTYE TPEDAALAYD KAAFEMHGAK AKLNFPHLIG TDCSWEPIRV 180 GSRRRSPEHS AWTALSGSTN CPAKPKKKKN REISIQAEAS LAAEMIEMSP FI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-24	109	166	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A	2e-24	109	166	6	63	ATERF1
2gcc_A	2e-24	109	166	6	63	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489696.1	1e-174	PREDICTED: ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	7e-60	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A0D2P5I0	1e-174	A0A0D2P5I0_G
STRING	POPTR_0014s04600.1	1e-60	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-59	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Gorai.007G086100.1
Entrez Gene	105802541

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]